PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485955.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28275.8 Da    PI: 9.9233
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312473150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_004485955.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                    79***********************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-411675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6831676IPR002100Transcription factor, MADS-box
CDDcd002656.47E-451791No hitNo description
SuperFamilySSF554554.06E-331788IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003199.3E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-335374IPR002100Transcription factor, MADS-box
PfamPF014864.7E-2999186IPR002487Transcription factor, K-box
PROSITE profilePS5129715.291102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDFQNQSMSD SPQRKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKAT IERYKKACSD SSGTGSASEA NAQFYQQEAD KLRAQISNLQ  120
NNNRQMMGES LGSMTAKELK NLEGKLEKGI SRIRSKKNQL LFAEIEYMQK REIDLHNNNQ  180
LLRAKIAESE RNHHNMSVLP GGTSYESMQS QHQQQQQQYD SRGYFQVTGL QPSSQYARQD  240
QMSLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S1e-201684169Myocyte-specific enhancer factor 2B
1tqe_R1e-201684169Myocyte-specific enhancer factor 2B
1tqe_Q1e-201684169Myocyte-specific enhancer factor 2B
1tqe_P1e-201684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1598040.0KF159804.1 Medicago truncatula cultivar Jemalong A17 MADS-box transcription factor AGAMOUSa (AGa) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485955.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X5
SwissprotQ435851e-133AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLT2D2Y21e-163T2D2Y2_PEA; MADS-box transcription factor 12
STRINGGLYMA13G29510.11e-151(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-106MIKC_MADS family protein